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LINUX Cluster Project

ESWL - Med II


Institution

  • Name: Medizinische Klinik und Poliklinik II
  • Address: Marchioninistraße 15, 81377 München
  • Project Proposal Date: 2019-11-04 15:00:26

Abstract:

We would like to perform bioinformatics analysis using R servers. We would like to use different R based pipeline for pre-processing, expression estimation and data quality assessment of high throughput sequencing transcriptional profiling (RNA-seq) datasets. The pipeline starts from raw sequence files and produces standard Bioconductor R objects containing transcript measurements for downstream analysis along with web reports for data quality assessment. Conventional techniques used in bioinformatics takes a lot of time to get results and also it’s difficult to analyze the complex nature of data involved. Therefore, machines having huge processing capabilities are neecessary. Use of R cloud from LRZ will aid us solving this problem.